STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB42063.1PFAM: Bacterial regulatory proteins, tetR family. (222 aa)    
Predicted Functional Partners:
AGB42079.1
PFAM: Glycine/sarcosine/betaine reductase component B subunits.
 
     0.754
AGB42064.1
PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family.
  
 
 0.725
AGB42078.1
PFAM: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); TIGRFAM: selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family; manually curated.
 
     0.706
AGB42061.1
PFAM: Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; Elongation factor SelB, winged helix; TIGRFAM: selenocysteine-specific elongation factor SelB; small GTP-binding protein domain.
 
     0.598
AGB42074.1
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III.
 
   
 0.576
AGB41131.1
Putative homoserine kinase type II (protein kinase fold); PFAM: Phosphotransferase enzyme family.
  
     0.574
selA
seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
     0.566
AGB41127.1
ABC-type spermidine/putrescine transport system, permease component II; PFAM: Binding-protein-dependent transport system inner membrane component; manually curated; non-canonical start codon.
  
    0.534
AGB41125.1
ABC-type uncharacterized transport system, periplasmic component.
  
     0.512
AGB42073.1
Fatty acid/phospholipid biosynthesis enzyme; PFAM: Fatty acid synthesis protein.
  
     0.509
Your Current Organism:
Halobacteroides halobius
NCBI taxonomy Id: 748449
Other names: H. halobius DSM 5150, Halobacteroides halobius ATCC 35273, Halobacteroides halobius DSM 5150, Halobacteroides halobius MD-1, Halobacteroides halobius str. DSM 5150, Halobacteroides halobius strain DSM 5150
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