STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB42068.1Selenium metabolism protein YedF; PFAM: SirA-like protein; DsrE/DsrF-like family; TIGRFAM: selenium metabolism protein YedF; Belongs to the sulfur carrier protein TusA family. (189 aa)    
Predicted Functional Partners:
selD
Selenium donor protein; Synthesizes selenophosphate from selenide and ATP.
 
   
 0.860
AGB42065.1
PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurase family protein.
 
 
 
 0.779
AGB42061.1
PFAM: Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; Elongation factor SelB, winged helix; TIGRFAM: selenocysteine-specific elongation factor SelB; small GTP-binding protein domain.
 
   
 0.764
AGB42067.1
Rhodanese-related sulfurtransferase; PFAM: Rhodanese-like domain.
 
  
 0.746
selA
seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
  
 0.736
AGB42229.1
NAD(FAD)-dependent dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; DsrE/DsrF-like family; SirA-like protein; Rhodanese-like domain; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Belongs to the sulfur carrier protein TusA family.
  
  
 0.725
AGB41017.1
TIGRFAM: selenium-dependent molybdenum hydroxylase system protein, YqeB family.
 
 
 
 0.627
AGB42493.1
PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurase family protein.
 
 
 
 0.597
AGB42066.1
Hypothetical protein.
       0.529
AGB42074.1
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III.
  
     0.526
Your Current Organism:
Halobacteroides halobius
NCBI taxonomy Id: 748449
Other names: H. halobius DSM 5150, Halobacteroides halobius ATCC 35273, Halobacteroides halobius DSM 5150, Halobacteroides halobius MD-1, Halobacteroides halobius str. DSM 5150, Halobacteroides halobius strain DSM 5150
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.