STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB42162.1PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (181 aa)    
Predicted Functional Partners:
AGB42161.1
Ferredoxin.
 
   
 0.968
AGB41914.1
Anti-sigma regulatory factor (Ser/Thr protein kinase); PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
  
 0.860
AGB41912.1
DRTGG domain-containing protein; PFAM: DRTGG domain.
 
   
 0.851
AGB41915.1
DRTGG domain-containing protein; PFAM: DRTGG domain.
 
   
 0.851
AGB41913.1
PFAM: Iron only hydrogenase large subunit, C-terminal domain; Putative Fe-S cluster; 4Fe-4S binding domain.
 
  
 0.850
AGB42160.1
NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit; PFAM: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; Respiratory-chain NADH dehydrogenase 24 Kd subunit; Respiratory-chain NADH dehydrogenase 51 Kd subunit; SLBB domain.
 
  
 0.850
AGB41911.1
Putative metal-dependent phosphoesterase, PHP family; PFAM: PHP domain.
 
     0.845
AGB42163.1
PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit.
     
 0.832
AGB40047.1
ABC-type sugar transport system, periplasmic component; PFAM: family.
    
 
 0.786
AGB42386.1
ABC-type sugar transport system, periplasmic component; PFAM: family.
    
 
 0.786
Your Current Organism:
Halobacteroides halobius
NCBI taxonomy Id: 748449
Other names: H. halobius DSM 5150, Halobacteroides halobius ATCC 35273, Halobacteroides halobius DSM 5150, Halobacteroides halobius MD-1, Halobacteroides halobius str. DSM 5150, Halobacteroides halobius strain DSM 5150
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