STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB42310.1Subtilisin-like serine protease; PFAM: Subtilase family; Belongs to the peptidase S8 family. (543 aa)    
Predicted Functional Partners:
AGB41472.1
TIGRFAM: RHS repeat-associated core domain.
 
  
 0.736
AGB41469.1
TIGRFAM: RHS repeat-associated core domain; YD repeat (two copies); manually curated; non-canonical start codon.
 
  
 0.720
AGB42309.1
PFAM: Predicted permease YjgP/YjgQ family.
       0.577
AGB42308.1
PFAM: Predicted permease YjgP/YjgQ family.
       0.559
AGB42307.1
Organic solvent tolerance protein OstA; PFAM: OstA-like protein.
       0.555
secY
Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
   
 
 0.537
AGB41480.1
PFAM: RHS Repeat; TIGRFAM: RHS repeat-associated core domain; YD repeat (two copies).
 
  
 0.516
AGB40708.1
DNA segregation ATPase, FtsK/SpoIIIE family; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family.
  
 
 0.515
AGB42238.1
SpoIID/LytB domain protein; PFAM: Tetratricopeptide repeat; Stage II sporulation protein; TIGRFAM: SpoIID/LytB domain.
 
 
 0.500
AGB40855.1
PFAM: Protein kinase domain; PASTA domain.
 
   
 0.469
Your Current Organism:
Halobacteroides halobius
NCBI taxonomy Id: 748449
Other names: H. halobius DSM 5150, Halobacteroides halobius ATCC 35273, Halobacteroides halobius DSM 5150, Halobacteroides halobius MD-1, Halobacteroides halobius str. DSM 5150, Halobacteroides halobius strain DSM 5150
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.