STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB42311.1Hypothetical protein; PFAM: L,D-transpeptidase catalytic domain. (280 aa)    
Predicted Functional Partners:
AGB41449.1
Hypothetical protein; PFAM: Putative peptidoglycan binding domain; L,D-transpeptidase catalytic domain.
  
     0.739
AGB40997.1
PFAM: Spore germination protein; TIGRFAM: spore germination protein (amino acid permease).
  
     0.569
AGB41891.1
Penicillin-binding protein 2; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; TIGRFAM: penicillin-binding protein 2.
     
 0.520
AGB42431.1
PFAM: Spore germination protein; TIGRFAM: spore germination protein (amino acid permease).
  
     0.510
AGB42435.1
PFAM: Spore germination protein; TIGRFAM: spore germination protein (amino acid permease).
  
     0.499
AGB42425.1
Hypothetical protein.
  
     0.478
AGB41315.1
TIGRFAM: spore photoproduct lyase.
  
     0.469
AGB40049.1
PFAM: Spore germination protein; TIGRFAM: spore germination protein (amino acid permease).
  
     0.440
AGB42488.1
PFAM: Protein of unknown function (DUF1256); TIGRFAM: putative sporulation protein YyaC.
  
     0.416
AGB40511.1
PFAM: Stage III sporulation protein AE (spore_III_AE); TIGRFAM: stage III sporulation protein AE.
  
     0.405
Your Current Organism:
Halobacteroides halobius
NCBI taxonomy Id: 748449
Other names: H. halobius DSM 5150, Halobacteroides halobius ATCC 35273, Halobacteroides halobius DSM 5150, Halobacteroides halobius MD-1, Halobacteroides halobius str. DSM 5150, Halobacteroides halobius strain DSM 5150
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.