STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB42386.1ABC-type sugar transport system, periplasmic component; PFAM: family. (347 aa)    
Predicted Functional Partners:
AGB42384.1
Permease component of ribose/xylose/arabinose/galactoside ABC-type transporters; PFAM: Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.
 0.998
AGB42385.1
ABC-type sugar transport system, ATPase component; PFAM: ABC transporter.
 0.998
AGB40937.1
PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; TIGRFAM: PAS domain S-box.
   
 
 0.797
AGB40399.1
PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
    
 
 0.786
AGB42162.1
PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
    
 
 0.786
AGB40047.1
ABC-type sugar transport system, periplasmic component; PFAM: family.
  
     0.773
iolC
Sugar kinase, ribokinase; Catalyzes the phosphorylation of 5-dehydro-2-deoxy-D- gluconate (2-deoxy-5-keto-D-gluconate or DKG) to 6-phospho-5-dehydro-2- deoxy-D-gluconate (DKGP).
 
  
 0.557
AGB42381.1
Putative enzyme involved in inositol metabolism; PFAM: KduI/IolB family.
 
  
 0.460
AGB41669.1
PFAM: Bacterial regulatory proteins, lacI family; family.
 
  
 0.441
AGB40139.1
ATPase component of ABC-type sugar transporter; PFAM: ABC transporter; TOBE domain.
   
  
 0.429
Your Current Organism:
Halobacteroides halobius
NCBI taxonomy Id: 748449
Other names: H. halobius DSM 5150, Halobacteroides halobius ATCC 35273, Halobacteroides halobius DSM 5150, Halobacteroides halobius MD-1, Halobacteroides halobius str. DSM 5150, Halobacteroides halobius strain DSM 5150
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