STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB42431.1PFAM: Spore germination protein; TIGRFAM: spore germination protein (amino acid permease). (361 aa)    
Predicted Functional Partners:
AGB42433.1
Germination protein, Ger(X)C family; PFAM: Spore germination B3/ GerAC like, C-terminal; TIGRFAM: germination protein, Ger(x)C family.
 
  
 0.809
AGB40050.1
Germination protein, Ger(X)C family; PFAM: Spore germination B3/ GerAC like, C-terminal; TIGRFAM: germination protein, Ger(x)C family.
 
  
 0.798
AGB42435.1
PFAM: Spore germination protein; TIGRFAM: spore germination protein (amino acid permease).
  
     0.772
AGB40441.1
TIGRFAM: germination protein YpeB.
 
     0.765
AGB40049.1
PFAM: Spore germination protein; TIGRFAM: spore germination protein (amino acid permease).
  
     0.753
AGB40554.1
Stage II sporulation protein M; PFAM: Reticulon; Integral membrane protein DUF95; TIGRFAM: stage II sporulation protein M.
  
     0.744
AGB42434.1
PFAM: Bacillus/Clostridium GerA spore germination protein.
 
  
 0.728
AGB40048.1
PFAM: Bacillus/Clostridium GerA spore germination protein.
 
  
 0.689
AGB40511.1
PFAM: Stage III sporulation protein AE (spore_III_AE); TIGRFAM: stage III sporulation protein AE.
  
     0.678
AGB42429.1
PFAM: Stage II sporulation protein R (spore_II_R); TIGRFAM: stage II sporulation protein R.
 
     0.676
Your Current Organism:
Halobacteroides halobius
NCBI taxonomy Id: 748449
Other names: H. halobius DSM 5150, Halobacteroides halobius ATCC 35273, Halobacteroides halobius DSM 5150, Halobacteroides halobius MD-1, Halobacteroides halobius str. DSM 5150, Halobacteroides halobius strain DSM 5150
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