STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB42471.1Protein possibly involved in post-translational modification of quorum-sensing peptides; PFAM: Accessory gene regulator B. (213 aa)    
Predicted Functional Partners:
AGB42472.1
PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
  
  0.978
AGB40873.1
PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
    
  0.908
AGB42470.1
Hypothetical protein.
       0.773
AGB40937.1
PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; TIGRFAM: PAS domain S-box.
  
  
 0.729
AGB41441.1
Bacterioferritin (cytochrome b1); PFAM: Ferritin-like domain; Belongs to the Dps family.
  
     0.719
AGB40481.1
Fe2+ transport system protein A; PFAM: FeoA domain.
  
     0.652
AGB40477.1
Fe2+ transport system protein A; PFAM: FeoA domain.
  
     0.650
AGB40814.1
Hypothetical protein; TIGRFAM: putative membrane fusion protein.
  
     0.637
AGB42031.1
Hypothetical protein; Manually curated; non-canonical start codon.
  
     0.574
AGB42473.1
Transposase family protein; PFAM: Transposase DDE domain.
       0.529
Your Current Organism:
Halobacteroides halobius
NCBI taxonomy Id: 748449
Other names: H. halobius DSM 5150, Halobacteroides halobius ATCC 35273, Halobacteroides halobius DSM 5150, Halobacteroides halobius MD-1, Halobacteroides halobius str. DSM 5150, Halobacteroides halobius strain DSM 5150
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.