STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADK14973.1Predicted cobalamin B12-binding protein. (218 aa)    
Predicted Functional Partners:
ADK14974.1
Uroporphyrinogen decarboxylase related protein; Belongs to the uroporphyrinogen decarboxylase family.
 
 0.990
ADK14971.1
Uroporphyrinogen decarboxylase related protein; Belongs to the uroporphyrinogen decarboxylase family.
 
 
 0.982
metH4
Methionine synthase.
  
 0.970
metH5
Methionine synthase.
  
 0.970
ADK15166.1
Predicted methyltransferase MtaA/CmuA family; Belongs to the uroporphyrinogen decarboxylase family.
 
 0.965
ADK15118.1
Putative corrinoid protein.
  
  
 
0.919
ADK15168.1
Predicted cobalamin B12-binding protein.
  
  
 
0.902
ADK14975.1
Predicted ferredoxin-containing protein.
 
    0.898
hemE
Uroporphyrinogen decarboxylase (URU-D); Belongs to the uroporphyrinogen decarboxylase family.
  
 0.877
meTr
Predicted methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase.
  
 0.874
Your Current Organism:
Clostridium ljungdahlii
NCBI taxonomy Id: 748727
Other names: C. ljungdahlii DSM 13528, Clostridium ljungdahlii DSM 13528, Clostridium ljungdahlii PETC, Clostridium ljungdahlii str. DSM 13528, Clostridium ljungdahlii strain DSM 13528
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