STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADK14996.1Predicted signal transduction protein. (400 aa)    
Predicted Functional Partners:
ADK16625.1
Hypothetical protein.
 
   
 0.540
ADK14104.1
Fusion of flagellar biosynthesis proteins FliR and FlhB; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.
 
     0.511
ADK14995.1
Conserved hypothetical protein.
       0.503
ADK13356.1
Hypothetical protein.
 
     0.468
ADK13483.1
GGDEF domain containing protein.
 
   
 0.451
ADK14997.1
Hypothetical protein.
       0.422
ADK14998.1
Hypothetical protein.
       0.422
motA1
Chemotaxis protein.
 
     0.421
Your Current Organism:
Clostridium ljungdahlii
NCBI taxonomy Id: 748727
Other names: C. ljungdahlii DSM 13528, Clostridium ljungdahlii DSM 13528, Clostridium ljungdahlii PETC, Clostridium ljungdahlii str. DSM 13528, Clostridium ljungdahlii strain DSM 13528
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.