Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
ADK15027.1Predicted ABC transporter, ATPase component. (241 aa)    
Predicted Functional Partners:
ADK15028.1
Putative ABC transporter related membrane protein.
 
 
 0.925
ADK15764.1
Predicted membrane protein.
 
 
 0.686
ADK14898.1
Predicted ABC transporter, permease component.
 
 
 0.670
ADK16346.1
Putative membrane protein; Related to a permease.
 
  
 0.538
ADK15026.1
Two-component response regulator.
     
 0.519
ADK15025.1
Predicted signal transduction histidine kinase.
   
   0.513
ADK15029.1
Predicted glycosyltransferase.
   
   0.491
mprF
Putative membrane protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms.
  
    0.490
ADK16888.1
Predicted ABC transporter, ATPase component.
 
    
0.413
Your Current Organism:
Clostridium ljungdahlii
NCBI taxonomy Id: 748727
Other names: C. ljungdahlii DSM 13528, Clostridium ljungdahlii DSM 13528, Clostridium ljungdahlii PETC, Clostridium ljungdahlii str. DSM 13528, Clostridium ljungdahlii strain DSM 13528
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