STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB26600.1aromatic-L-amino-acid decarboxylase. (471 aa)    
Predicted Functional Partners:
SFB45625.1
Glutamate synthase (NADPH/NADH) large chain.
    
 0.928
SFB21433.1
Lipid kinase, YegS/Rv2252/BmrU family.
   
 0.829
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
 0.678
kynA
Tryptophan 2,3-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.
  
  
  0.672
SFB47549.1
Monoamine oxidase.
    
 0.663
SFB30494.1
Alanine-synthesizing transaminase.
  
 
 0.636
SFA86463.1
Histidine ammonia-lyase.
     
 0.632
pat
Histidinol-phosphate aminotransferase; May catalyze the transamination reaction in phenylalanine biosynthesis; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.
    
  0.624
hisC
Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
    
  0.624
SFB21314.1
Prephenate dehydratase.
    
  0.624
Your Current Organism:
Nocardioides alpinus
NCBI taxonomy Id: 748909
Other names: CGMCC 1.10697, DSM 23325, LMG 26053, LMG:26053, N. alpinus, Nocardioides alpinus Zhang et al. 2012, Nocardioides sp. Cr7-14, strain Cr7-14
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