STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB35340.1Protein of unknown function. (254 aa)    
Predicted Functional Partners:
SFB35331.1
Hypothetical protein.
       0.689
SFB10442.1
Acetyltransferase (GNAT) domain-containing protein.
  
     0.631
SFB09003.1
Type 1 glutamine amidotransferase (GATase1).
  
     0.539
SFB35297.1
LAO/AO transport system kinase.
       0.476
SFB35310.1
methylmalonyl-CoA mutase.
       0.476
SFB35321.1
methylmalonyl-CoA mutase.
       0.476
SFB35288.1
Amidohydrolase.
       0.467
SFB49297.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
  
     0.405
SFB32425.1
Hypothetical protein.
  
     0.403
Your Current Organism:
Nocardioides alpinus
NCBI taxonomy Id: 748909
Other names: CGMCC 1.10697, DSM 23325, LMG 26053, LMG:26053, N. alpinus, Nocardioides alpinus Zhang et al. 2012, Nocardioides sp. Cr7-14, strain Cr7-14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.