STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB39569.1Helix-turn-helix domain-containing protein. (103 aa)    
Predicted Functional Partners:
SFB39577.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
    
 0.693
SFA84862.1
Hypothetical protein.
  
     0.649
rbpA-2
RNA polymerase-binding protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
    0.636
SFB43742.1
Protein of unknown function.
  
     0.635
SFB46737.1
MerR HTH family regulatory protein.
  
    0.616
SFB40244.1
Broad specificity phosphatase PhoE.
  
     0.599
SFB36918.1
Protein of unknown function.
  
     0.593
SFA96289.1
Protein of unknown function.
  
     0.574
SFB25876.1
TIGR03083 family protein.
  
   0.573
SFB32253.1
TIGR03083 family protein.
  
   0.573
Your Current Organism:
Nocardioides alpinus
NCBI taxonomy Id: 748909
Other names: CGMCC 1.10697, DSM 23325, LMG 26053, LMG:26053, N. alpinus, Nocardioides alpinus Zhang et al. 2012, Nocardioides sp. Cr7-14, strain Cr7-14
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