STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADV45495.1Hypothetical protein; KEGG: sli:Slin_3280 DNA binding domain protein, excisionase family; SPTR: DNA binding domain protein, excisionase family. (74 aa)    
Predicted Functional Partners:
ADV45492.1
VRR-NUC domain-containing protein; InterPro IPR014883; KEGG: nis:NIS_0452 hypothetical protein; PFAM: VRR-NUC domain-containing protein; SPTR: Phage-related protein; PFAM: VRR-NUC domain.
       0.773
ADV45493.1
KEGG: ttr:Tter_2836 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Bacteriophage replication protein O; TIGRFAM: phage replication protein O, N-terminal domain.
       0.773
ADV45494.1
KEGG: nis:NIS_0453 hypothetical protein; SPTR: Phage-related protein.
       0.773
ADV45491.1
KEGG: bmj:BMULJ_01390 putative bacteriophage protein; SPTR: Putative uncharacterized protein.
       0.596
ADV45496.1
Hypothetical protein; KEGG: tva:TVAG_247100 viral A-type inclusion protein; SPTR: Possible capsular polysaccharide related protein.
       0.526
ADV45497.1
Integrase family protein; InterPro IPR002104; KEGG: sun:SUN_2412 phage integrase family site specific recombinase; PFAM: integrase family protein; SPTR: Site-specific recombinase, phage integrase family; tmRNA as predicted by Rfam (RF00023), score 164.20; PFAM: Phage integrase family; Belongs to the 'phage' integrase family.
       0.526
ADV45490.1
RecT protein; COGs: COG3723 Recombinational DNA repair protein (RecE pathway); InterPro IPR004590: IPR018330; KEGG: tme:Tmel_1472 recombination and repair protein RecT; PFAM: DNA single-strand annealing protein RecT-like; SPTR: Phage recombination protein Bet; TIGRFAM: RecT protein; PFAM: RecT family; TIGRFAM: recombinase, phage RecT family.
       0.426
Your Current Organism:
Nitratifractor salsuginis
NCBI taxonomy Id: 749222
Other names: N. salsuginis DSM 16511, Nitratifractor salsuginis DSM 16511, Nitratifractor salsuginis E9I37-1, Nitratifractor salsuginis str. DSM 16511, Nitratifractor salsuginis strain DSM 16511
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