STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADV45651.1SMF family protein; COGs: COG0758 Rossmann fold nucleotide-binding protein involved in DNA uptake; InterPro IPR003488; KEGG: sun:SUN_0445 DNA processing protein A; PFAM: SMF family protein; SPTR: DNA processing protein A; PFAM: DNA recombination-mediator protein A; TIGRFAM: DNA protecting protein DprA. (259 aa)    
Predicted Functional Partners:
ADV45286.1
Mg chelatase, subunit ChlI; COGs: COG0606 ATPase with chaperone activity; InterPro IPR004482: IPR000523; KEGG: sun:SUN_0014 Mg chelatase-related protein; PFAM: magnesium chelatase ChlI subunit; SPTR: Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: Magnesium chelatase, subunit ChlI; TIGRFAM: Mg chelatase-related protein.
 
 0.879
ADV45650.1
Protein of unknown function DUF610 YibQ; COGs: COG2861 conserved hypothetical protein; InterPro IPR006837; KEGG: sun:SUN_0444 hypothetical protein; PFAM: protein of unknown function DUF610 YibQ; SPTR: Putative uncharacterized protein; PFAM: Divergent polysaccharide deacetylase.
       0.800
ADV46768.1
COGs: COG1040 amidophosphoribosyltransferase; InterPro IPR000836; KEGG: sun:SUN_1049 transformation system protein; PFAM: phosphoribosyltransferase; SPTR: Transformation system protein; PFAM: Phosphoribosyl transferase domain.
  
 
 0.741
ADV46143.1
Prepilin peptidase; COGs: COG1989 Type II secretory pathway prepilin signal peptidase PulO and related peptidase; InterPro IPR010627: IPR000045; KEGG: sun:SUN_1839 type 4 prepilin peptidase; PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; PRIAM: Prepilin peptidase; SPTR: Type 4 prepilin peptidase; PFAM: Bacterial Peptidase A24 N-terminal domain; Type IV leader peptidase family.
  
  
 0.708
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
 
   
 0.566
ADV47267.1
ComEC/Rec2-related protein; InterPro IPR004477; KEGG: sun:SUN_2132 DNA uptake protein; PFAM: ComEC/Rec2-related protein; SPTR: DNA uptake protein; TIGRFAM: ComEC/Rec2-related protein; PFAM: Competence protein; TIGRFAM: ComEC/Rec2-related protein.
  
  
 0.565
ADV47061.1
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
 
  
 0.549
ADV46885.1
COGs: COG2200 FOG: EAL domain; InterPro IPR001789: IPR001633; KEGG: ant:Arnit_0784 response regulator receiver modulated diguanylate cyclase/phosphodiesterase; PFAM: EAL domain protein; response regulator receiver; SMART: EAL domain protein; response regulator receiver; SPTR: Response regulator receiver modulated diguanylate cyclase/phosphodiesterase; PFAM: EAL domain; GGDEF domain; Response regulator receiver domain.
   
  
 0.544
ADV47120.1
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
 
  
 0.534
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
   
 
 0.514
Your Current Organism:
Nitratifractor salsuginis
NCBI taxonomy Id: 749222
Other names: N. salsuginis DSM 16511, Nitratifractor salsuginis DSM 16511, Nitratifractor salsuginis E9I37-1, Nitratifractor salsuginis str. DSM 16511, Nitratifractor salsuginis strain DSM 16511
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