STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADV45784.1KEGG: tdn:Suden_1552 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: NosL. (243 aa)    
Predicted Functional Partners:
ADV45785.1
COGs: COG4314 lipoprotein involved in nitrous oxide reduction; KEGG: abu:Abu_0738 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: NosL.
      0.948
ADV45774.1
KEGG: sun:SUN_2170 ABC transporter, permease; SPTR: ABC transporter, permease.
  
 
 0.547
ADV45783.1
TonB-dependent receptor; COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910: IPR000531; KEGG: sun:SUN_2180 TonB-dependent copper receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent copper receptor; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
       0.481
ADV45787.1
Protein of unknown function DUF214; COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: abu:Abu_2115 hypothetical protein; PFAM: protein of unknown function DUF214; SPTR: Putative uncharacterized protein; PFAM: Predicted permease.
       0.431
Your Current Organism:
Nitratifractor salsuginis
NCBI taxonomy Id: 749222
Other names: N. salsuginis DSM 16511, Nitratifractor salsuginis DSM 16511, Nitratifractor salsuginis E9I37-1, Nitratifractor salsuginis str. DSM 16511, Nitratifractor salsuginis strain DSM 16511
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.