STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADV46452.1Putative phage repressor; COGs: COG2932 transcriptional regulator protein; InterPro IPR001387: IPR019759; KEGG: ccv:CCV52592_0048 hypothetical protein; PFAM: helix-turn-helix domain protein; Peptidase S24/S26A/S26B, conserved region; SMART: helix-turn-helix domain protein; SPTR: Possible repressor lexA; PFAM: Helix-turn-helix; Peptidase S24-like. (200 aa)    
Predicted Functional Partners:
ADV46451.1
Helix-turn-helix domain protein; InterPro IPR001387; KEGG: btk:BT9727_0944 DNA-binding protein transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Putative uncharacterized protein; PFAM: Helix-turn-helix.
       0.521
ADV46453.1
KEGG: ppr:PBPRB1440 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.486
ADV46448.1
Hypothetical protein; KEGG: ccv:CCV52592_0042 type II secretion system protein; SPTR: Type II secretion system protein; PFAM: KaiC.
 
     0.453
Your Current Organism:
Nitratifractor salsuginis
NCBI taxonomy Id: 749222
Other names: N. salsuginis DSM 16511, Nitratifractor salsuginis DSM 16511, Nitratifractor salsuginis E9I37-1, Nitratifractor salsuginis str. DSM 16511, Nitratifractor salsuginis strain DSM 16511
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