STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADV46778.1Protein of unknown function DUF1456; COGs: COG4807 conserved hypothetical protein; InterPro IPR009921; KEGG: sun:SUN_0645 hypothetical protein; PFAM: protein of unknown function DUF1456; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1456). (158 aa)    
Predicted Functional Partners:
ADV46777.1
Protein of unknown function DUF302; InterPro IPR005180; KEGG: sun:SUN_0647 hypothetical protein; PFAM: protein of unknown function DUF302; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function DUF302.
       0.773
ychF
GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
       0.714
ADV46779.1
Thioredoxin; COGs: COG3118 Thioredoxin domain-containing protein; InterProIPR006662: IPR017936: IPR013766: IPR005746: IPR 017937; KEGG: sun:SUN_1299 thioredoxin; PFAM: Thioredoxin domain-containing protein; SPTR: Thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin; TIGRFAM: thioredoxin; Belongs to the thioredoxin family.
       0.581
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
       0.553
ADV46775.1
Na+/Ca+ antiporter, CaCA family; COGs: COG0530 Ca2+/Na+ antiporter; InterPro IPR004837: IPR004481; KEGG: sun:SUN_1266 calcium/cation antiporter; PFAM: sodium/calcium exchanger membrane region; SPTR: Calcium:H+/Na+ antiporter, CaCA family; TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: Sodium/calcium exchanger protein; TIGRFAM: K+-dependent Na+/Ca+ exchanger related-protein.
       0.553
ADV46021.1
InterPro IPR018702; KEGG: sun:SUN_1004 hypothetical protein; PFAM: Protein of unknown function DUF2207, membrane; SPTR: Putative uncharacterized protein; PFAM: Predicted membrane protein (DUF2207).
   
    0.483
ADV45669.1
Peptidoglycan-binding lysin domain protein; COGs: COG3584 conserved hypothetical protein; InterPro IPR002482: IPR018392; KEGG: sun:SUN_1623 hypothetical protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; SPTR: Putative uncharacterized protein; PFAM: LysM domain.
  
     0.438
rimO
SSU ribosomal protein S12P methylthiotransferase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
  
    0.419
Your Current Organism:
Nitratifractor salsuginis
NCBI taxonomy Id: 749222
Other names: N. salsuginis DSM 16511, Nitratifractor salsuginis DSM 16511, Nitratifractor salsuginis E9I37-1, Nitratifractor salsuginis str. DSM 16511, Nitratifractor salsuginis strain DSM 16511
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