STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
echA4COG1024 Enoyl-CoA hydratase/carnithine racemase. (270 aa)    
Predicted Functional Partners:
echA11
COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
     0.774
SBI_03357
Two-component system sensor kinase; COG2770 FOG: HAMP domain.
  
 
 0.762
SBI_03766
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 
 0.754
SBI_02624
Hypothetical protein; COG0642 Signal transduction histidine kinase.
       0.753
SBI_08156
Two-component system sensor kinase; COG2770 FOG: HAMP domain.
  
 
 0.743
SBI_02832
Putative oxidoreductase; COG1250 3-hydroxyacyl-CoA dehydrogenase.
 
 0.682
SBI_09848
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 
 0.680
SBI_02513
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 
 0.677
SBI_05427
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 
 0.661
pks3-5
Putative mixed polyketide synthase/non-ribosomal peptide synthetase; COG3321 Polyketide synthase modules and related proteins.
  
 0.635
Your Current Organism:
Streptomyces bingchenggensis
NCBI taxonomy Id: 749414
Other names: S. bingchenggensis BCW-1, Streptomyces bingchenggensis BCW-1, Streptomyces bingchenggensis str. BCW-1, Streptomyces bingchenggensis strain BCW-1
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