STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBI_03298COG5640 Secreted trypsin-like serine protease. (294 aa)    
Predicted Functional Partners:
SBI_01253
Hydrolase; COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
  
     0.761
sig13
RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
     
 0.761
SBI_03300
COG2186 Transcriptional regulators.
       0.652
SBI_05499
Hypothetical protein.
    
 0.634
SBI_00870
Proteinase inhibitor I4 serpin; COG4826 Serine protease inhibitor; Belongs to the serpin family.
   
 0.632
SBI_03301
ABC transporter ATP-binding protein; COG1131 ABC-type multidrug transport system, ATPase component.
   
   0.578
SBI_02635
COG2866 Predicted carboxypeptidase.
  
 
 0.485
SBI_04501
COG1316 Transcriptional regulator.
      
 0.477
SBI_03654
Putative calmodulin-like protein; COG5126 Ca2+-binding protein (EF-Hand superfamily).
    
 
 0.476
SBI_04625
Hypothetical protein; COG0666 FOG: Ankyrin repeat.
  
 
 0.463
Your Current Organism:
Streptomyces bingchenggensis
NCBI taxonomy Id: 749414
Other names: S. bingchenggensis BCW-1, Streptomyces bingchenggensis BCW-1, Streptomyces bingchenggensis str. BCW-1, Streptomyces bingchenggensis strain BCW-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.