Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
dsdAKEGG: fnu:FN0553 3.1e-125 D-serine dehydratase K01753; Psort location: Cytoplasmic, score: 8.96; Belongs to the serine/threonine dehydratase family. DsdA subfamily. (442 aa)    
Predicted Functional Partners:
ilvA
KEGG: lba:Lebu_1758 4.3e-119 threonine dehydratase; K01754 threonine dehydratase; Psort location: Cytoplasmic, score: 8.96.
     
 0.824
serA
KEGG: pth:PTH_0012 7.6e-138 serA; D-3-phosphoglycerate dehydrogenase; K00058 D-3-phosphoglycerate dehydrogenase; Psort location: Cytoplasmic, score: 9.97; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
 0.792
EFW28811.1
Hypothetical protein; KEGG: bce:BC3545 4.0e-29 chloramphenicol acetyltransferase K00638; Psort location: Cytoplasmic, score: 9.26.
       0.546
EFW30017.1
Aldehyde dehydrogenase (NAD) family protein; KEGG: ccu:Ccur_13620 6.8e-169 aldehyde dehydrogenase (acceptor); Psort location: Cytoplasmic, score: 9.97.
     
 0.538
EFW30328.1
Oxidoreductase, aldo/keto reductase family protein; KEGG: hau:Haur_0361 5.6e-87 2,5-didehydrogluconate reductase; Psort location: Cytoplasmic, score: 9.97.
     
  0.533
EFW29478.1
Glyoxalase family protein; KEGG: pgi:PG0745 3.8e-33 lactoylglutathione lyase, putative; K01759 lactoylglutathione lyase; Psort location: Cytoplasmic, score: 8.96.
     
  0.533
pdxB-2
4-phosphoerythronate dehydrogenase; KEGG: amt:Amet_2953 4.4e-87 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; K00018 glycerate dehydrogenase; Psort location: Cytoplasmic, score: 9.97.
     
  0.533
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
     
  0.448
Your Current Organism:
Selenomonas artemidis
NCBI taxonomy Id: 749551
Other names: S. artemidis F0399, Selenomonas artemidis F0399, Selenomonas artemidis str. F0399, Selenomonas artemidis strain F0399
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