Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
FAD_0108Hypothetical protein. (226 aa)    
Predicted Functional Partners:
FAD_0107
Triosephosphate isomerase; Belongs to the triosephosphate isomerase family.
       0.909
FAD_1751
Putative ATPase RIL.
       0.593
FAD_0099
3-deoxy-7-phosphoheptulonate synthase.
       0.497
FAD_0100
Indole-3-glycerol-phosphate synthase.
       0.497
FAD_0101
Anthranilate synthase component II.
       0.497
FAD_0102
Anthranilate synthase component I.
       0.497
trpF
N-(5'-phosphoribosyl)anthranilate isomerase; Belongs to the TrpF family.
       0.497
FAD_0104
Anthranilate phosphoribosyltransferase.
       0.497
FAD_0105
Tryptophan synthase alpha chain.
       0.497
trpB
Tryptophan synthase subunit beta; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
       0.497
Your Current Organism:
Ferroplasma acidiphilum
NCBI taxonomy Id: 74969
Other names: DSM 12658, F. acidiphilum, Ferromonas metallovorans, Ferroplasma acidiphilum Golyshina et al. 2000, JCM 10970
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