Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
FAD_0314Oxidoreductase. (286 aa)    
Predicted Functional Partners:
FAD_0315
Iron-sulfur cluster-binding protein.
 
 
 0.970
FAD_1539
Electron transfer flavoprotein subunit beta.
 
  
 0.630
FAD_0316
Phosphodiesterase I/nucleotide pyrophosphatase.
       0.620
FAD_1130
(S)-2-hydroxy-acid oxidase chain D.
 
  
 0.605
FAD_1538
Electron transfer flavoprotein alpha subunit.
 
  
 0.534
FAD_1381
Anaerobic glycerol-3-phosphate dehydrogenase subunit A.
 
  
 0.474
FAD_0312
Type II DNA modification methyltransferase.
       0.439
FAD_0313
Type II restriction endonuclease.
       0.439
gap
Glyceraldehyde-3-phosphate dehydrogenase.
   
  
 0.421
FAD_0715
Succinate dehydrogenase, subunit C.
 
 
 
 0.409
Your Current Organism:
Ferroplasma acidiphilum
NCBI taxonomy Id: 74969
Other names: DSM 12658, F. acidiphilum, Ferromonas metallovorans, Ferroplasma acidiphilum Golyshina et al. 2000, JCM 10970
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