FAD_0360 protein (Ferroplasma acidiphilum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

FAD_0360

Rhodanese-related sulfurtransferase. (104 aa)

Predicted Functional Partners:

sodA

0.611

rps17

0.548

rpl13

0.534

FAD_0158

0.527

FAD_0181

0.524

rpl11

0.513

FAD_0005

0.512

FAD_0170

0.501

FAD_0361

0.491

rpl14

0.456

Your Current Organism:

Ferroplasma acidiphilum

NCBI taxonomy Id: 74969
Other names: DSM 12658, F. acidiphilum, Ferromonas metallovorans, Ferroplasma acidiphilum Golyshina et al. 2000, JCM 10970

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FAD_0005	FAD_0158	FAD_0005	FAD_0158	Peptidyl-prolyl cis-trans isomerase.	50S ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.830
FAD_0005	FAD_0170	FAD_0005	FAD_0170	Peptidyl-prolyl cis-trans isomerase.	50S ribosomal protein L24P.	0.818
FAD_0005	FAD_0181	FAD_0005	FAD_0181	Peptidyl-prolyl cis-trans isomerase.	50S ribosomal protein L15P.	0.816
FAD_0005	FAD_0360	FAD_0005	FAD_0360	Peptidyl-prolyl cis-trans isomerase.	Rhodanese-related sulfurtransferase.	0.512
FAD_0005	rpl11	FAD_0005	FAD_1620	Peptidyl-prolyl cis-trans isomerase.	50S ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family.	0.820
FAD_0005	rpl13	FAD_0005	FAD_1597	Peptidyl-prolyl cis-trans isomerase.	50S ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.826
FAD_0005	rpl14	FAD_0005	FAD_0169	Peptidyl-prolyl cis-trans isomerase.	50S ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.837
FAD_0005	rps17	FAD_0005	FAD_0168	Peptidyl-prolyl cis-trans isomerase.	30S ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.789
FAD_0005	sodA	FAD_0005	FAD_1811	Peptidyl-prolyl cis-trans isomerase.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.840
FAD_0158	FAD_0005	FAD_0158	FAD_0005	50S ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Peptidyl-prolyl cis-trans isomerase.	0.830
FAD_0158	FAD_0170	FAD_0158	FAD_0170	50S ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	50S ribosomal protein L24P.	0.999
FAD_0158	FAD_0181	FAD_0158	FAD_0181	50S ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	50S ribosomal protein L15P.	0.999
FAD_0158	FAD_0360	FAD_0158	FAD_0360	50S ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Rhodanese-related sulfurtransferase.	0.527
FAD_0158	rpl11	FAD_0158	FAD_1620	50S ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	50S ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family.	0.993
FAD_0158	rpl13	FAD_0158	FAD_1597	50S ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	50S ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.997
FAD_0158	rpl14	FAD_0158	FAD_0169	50S ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	50S ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.999
FAD_0158	rps17	FAD_0158	FAD_0168	50S ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	30S ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.999
FAD_0158	sodA	FAD_0158	FAD_1811	50S ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.830
FAD_0170	FAD_0005	FAD_0170	FAD_0005	50S ribosomal protein L24P.	Peptidyl-prolyl cis-trans isomerase.	0.818
FAD_0170	FAD_0158	FAD_0170	FAD_0158	50S ribosomal protein L24P.	50S ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.999