Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
soxCCytochrome B subunit. (397 aa)    
Predicted Functional Partners:
FAD_0386
Hypothetical protein.
  
 0.999
FAD_0155
Cytochrome c oxidase polypeptide II.
 
 
 0.993
FAD_0152
Cytochrome c oxidase polypeptide I/III; Belongs to the heme-copper respiratory oxidase family.
 
 
 0.992
FAD_0628
NADH dehydrogenase subunit M.
 
 
 0.989
FAD_0622
NADH dehydrogenase subunit H.
 
 
 0.984
FAD_0629
NADH dehydrogenase subunit N.
 
 
 0.975
FAD_0618
NADH dehydrogenase subunit A.
  
 
 0.961
FAD_0623
NADH dehydrogenase subunit I.
  
 
 0.927
FAD_0621
NADH dehydrogenase subunit D.
   
 
 0.883
FAD_0619
NADH dehydrogenase subunit B; Belongs to the complex I 20 kDa subunit family.
   
 
 0.881
Your Current Organism:
Ferroplasma acidiphilum
NCBI taxonomy Id: 74969
Other names: DSM 12658, F. acidiphilum, Ferromonas metallovorans, Ferroplasma acidiphilum Golyshina et al. 2000, JCM 10970
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