Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
FAD_0396Transcriptional regulator. (205 aa)    
Predicted Functional Partners:
FAD_0050
Hypothetical protein; Belongs to the thiolase-like superfamily. UPF0219 family.
  
    0.948
FAD_0051
acetyl-CoA acetyltransferase.
  
    0.850
FAD_0052
Hypothetical protein.
  
    0.823
carS
Hypothetical protein; Catalyzes the formation of CDP-2,3-bis-(O-geranylgeranyl)-sn- glycerol (CDP-archaeol) from 2,3-bis-(O-geranylgeranyl)-sn-glycerol 1- phosphate (DGGGP) and CTP. This reaction is the third ether-bond- formation step in the biosynthesis of archaeal membrane lipids.
  
     0.652
FAD_1584
Molybdenum cofactor biosynthesis protein A.
  
     0.635
FAD_1623
Hypothetical protein.
 
     0.632
FAD_0222
Archaeosine tRNA-ribosyltransferase.
  
     0.600
FAD_0395
Hypothetical protein.
       0.576
FAD_1183
Riboflavin kinase.
 
     0.568
FAD_0331
50S ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.
  
     0.560
Your Current Organism:
Ferroplasma acidiphilum
NCBI taxonomy Id: 74969
Other names: DSM 12658, F. acidiphilum, Ferromonas metallovorans, Ferroplasma acidiphilum Golyshina et al. 2000, JCM 10970
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