Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FAD_0652Carbon monoxide dehydrogenase alpha subunit. (159 aa)    
Predicted Functional Partners:
FAD_0651
Carbon monoxide dehydrogenase, medium chain.
 
 0.999
FAD_0653
Carbon monoxide dehydrogenase beta subunit.
 
 0.999
FAD_0740
Carbon monoxide dehydrogenase beta subunit.
 
 0.998
FAD_0764
Glycosyltransferase family protein.
 
  
 0.843
FAD_0726
XshC/Cox1-family protein.
 
  
 0.646
FAD_1098
Aspartate aminotransferase.
 
      0.497
FAD_0654
ATP-dependent helicase.
       0.490
FAD_0633
Cysteine desulfurase.
  
  
 0.444
FAD_0650
Dioxygenase ferredoxin reductase component.
       0.432
Your Current Organism:
Ferroplasma acidiphilum
NCBI taxonomy Id: 74969
Other names: DSM 12658, F. acidiphilum, Ferromonas metallovorans, Ferroplasma acidiphilum Golyshina et al. 2000, JCM 10970
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