Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FAD_0660ABC transporter permease. (343 aa)    
Predicted Functional Partners:
FAD_0658
Hypothetical protein.
 0.999
FAD_0659
ABC transporter permease.
 0.999
FAD_0657
Hypothetical protein.
 
 0.988
FAD_0688
ABC-type peptide/opine/nickel family transporter ATPase.
 
 0.929
FAD_0687
ABC-type peptide/opine/nickel family permease.
 
 
 0.916
FAD_1015
ABC-type peptide/opine/nickel family transporter ATPase.
 
 
 0.845
FAD_0655
ABC transporter substrate-binding protein.
 
 
 0.786
FAD_0656
Hypothetical protein.
       0.776
FAD_1014
ABC-type peptide/opine/nickel family transporter ATPase.
 
  
 0.763
FAD_0093
ABC-type peptide transporter, permease component.
  
 
 0.753
Your Current Organism:
Ferroplasma acidiphilum
NCBI taxonomy Id: 74969
Other names: DSM 12658, F. acidiphilum, Ferromonas metallovorans, Ferroplasma acidiphilum Golyshina et al. 2000, JCM 10970
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