Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FAD_07543-hydroxyacyl-CoA dehydrogenase. (289 aa)    
Predicted Functional Partners:
FAD_1242
acetyl-CoA acetyltransferase.
 
 0.983
FAD_1293
enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 0.981
FAD_0051
acetyl-CoA acetyltransferase.
  
 0.974
FAD_1550
acetyl-CoA acetyltransferase.
  
 0.971
FAD_1712
enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 0.964
FAD_1277
Enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
 0.963
FAD_1246
Acetyl-CoA acetyltransferase; Frameshift and an internal stop codon in nucleotidyltransferase gene.
 
 0.952
FAD_0513
acetyl-CoA acetyltransferase.
 
 0.950
FAD_0980
acetyl-CoA acetyltransferase.
 
 0.944
FAD_0050
Hypothetical protein; Belongs to the thiolase-like superfamily. UPF0219 family.
    
  0.920
Your Current Organism:
Ferroplasma acidiphilum
NCBI taxonomy Id: 74969
Other names: DSM 12658, F. acidiphilum, Ferromonas metallovorans, Ferroplasma acidiphilum Golyshina et al. 2000, JCM 10970
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