Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
FAD_0758SAM-dependent methyltransferase. (266 aa)    
Predicted Functional Partners:
rlmE
FtsJ-like methyltransferase; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.
   
 
 0.660
rps5
30S ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy.
    
 0.641
FAD_0146
Ferredoxin.
      
 0.618
FAD_0579
Hydrogenase 4 subunit B.
      
 0.618
FAD_0619
NADH dehydrogenase subunit B; Belongs to the complex I 20 kDa subunit family.
    
 0.604
FAD_0621
NADH dehydrogenase subunit D.
    
 0.559
rps9
30S ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.
    
  0.537
FAD_0620
NADH dehydrogenase subunit C.
   
 0.515
moaB
Molybdenum cofactor biosynthesis protein B.
       0.503
FAD_0757
Molybdenum cofactor biosynthesis protein C.
       0.503
Your Current Organism:
Ferroplasma acidiphilum
NCBI taxonomy Id: 74969
Other names: DSM 12658, F. acidiphilum, Ferromonas metallovorans, Ferroplasma acidiphilum Golyshina et al. 2000, JCM 10970
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