Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FAD_0822Major facilitator superfamily permease. (431 aa)    
Predicted Functional Partners:
FAD_0823
Aspartate racemase.
       0.613
FAD_1591
Major facilitator superfamily permease.
  
     0.560
FAD_1738
Inorganic phosphate:H+ symporter family transporter.
  
     0.541
FAD_1753
Inorganic phosphate:H+ symporter family transporter.
  
     0.535
FAD_0824
Glutamate decarboxylase.
  
    0.517
FAD_0468
Allantoin permease family protein.
  
    0.507
FAD_0234
Amino acid permease.
  
   0.495
FAD_0821
Hypothetical protein.
       0.491
FAD_1445
Major facilitator superfamily permease.
  
     0.472
FAD_1407
Major facilitator superfamily permease.
  
     0.461
Your Current Organism:
Ferroplasma acidiphilum
NCBI taxonomy Id: 74969
Other names: DSM 12658, F. acidiphilum, Ferromonas metallovorans, Ferroplasma acidiphilum Golyshina et al. 2000, JCM 10970
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