Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
FAD_0989TetR family transcriptional regulator. (179 aa)    
Predicted Functional Partners:
FAD_1494
Monovalent cation:proton antiporter-2 family transporter.
 
     0.595
cas3
CRISPR-associated helicase Cas3.
  
     0.582
FAD_0988
Telurite-resistance/dicarboxylate family transporter.
       0.548
FAD_0655
ABC transporter substrate-binding protein.
 
     0.544
FAD_0496
Nucleoside-diphosphate-sugar epimerase.
  
     0.542
FAD_1040
Major facilitator superfamily permease.
  
     0.516
FAD_0234
Amino acid permease.
  
     0.492
FAD_1503
DNA repair helicase.
  
     0.420
Your Current Organism:
Ferroplasma acidiphilum
NCBI taxonomy Id: 74969
Other names: DSM 12658, F. acidiphilum, Ferromonas metallovorans, Ferroplasma acidiphilum Golyshina et al. 2000, JCM 10970
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