Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FAD_1000Major facilitator superfamily permease. (418 aa)    
Predicted Functional Partners:
FAD_0690
Hypothetical protein.
  
     0.670
FAD_0762
Hypothetical protein.
  
     0.652
FAD_1102
Amino acid transporter.
  
     0.616
FAD_0235
Multipass membrane protein, required for N-linked glycosylation.
  
   
 0.570
FAD_1013
Amino acid/polyamine/organocation superfamily transporter.
  
     0.517
FAD_0999
Multipass membrane protein.
       0.482
FAD_1086
Amino acid permease.
  
     0.473
FAD_0576
Hypothetical protein.
  
     0.460
FAD_1099
Metallophosphoesterase.
  
     0.449
FAD_1067
Fe-S oxidoreductase.
  
     0.446
Your Current Organism:
Ferroplasma acidiphilum
NCBI taxonomy Id: 74969
Other names: DSM 12658, F. acidiphilum, Ferromonas metallovorans, Ferroplasma acidiphilum Golyshina et al. 2000, JCM 10970
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