Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FAD_1045Ammonium transporter. (460 aa)    
Predicted Functional Partners:
dnaK
Chaperone DnaK; Acts as a chaperone.
   
 
 0.679
cysK
Cysteine synthase.
     
 0.674
FAD_0513
acetyl-CoA acetyltransferase.
      
 0.618
FAD_0980
acetyl-CoA acetyltransferase.
      
 0.618
FAD_1246
Acetyl-CoA acetyltransferase; Frameshift and an internal stop codon in nucleotidyltransferase gene.
      
 0.618
virB
Type IV secretory pathway DNA translocase.
      
 0.618
arsR
Arsenite-dependent repressor.
      
 0.618
sodA
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
      
 0.618
FAD_1041
Glutamate synthase (NADPH).
 
  
 0.586
FAD_0516
Potassium-transporting ATPase subunit C.
      
 0.469
Your Current Organism:
Ferroplasma acidiphilum
NCBI taxonomy Id: 74969
Other names: DSM 12658, F. acidiphilum, Ferromonas metallovorans, Ferroplasma acidiphilum Golyshina et al. 2000, JCM 10970
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