Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FAD_1247Hypothetical protein. (339 aa)    
Predicted Functional Partners:
FAD_1246
Acetyl-CoA acetyltransferase; Frameshift and an internal stop codon in nucleotidyltransferase gene.
     
 0.645
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
  
  
 0.499
FAD_0387
Sec-independent protein translocase protein TatA.
  
  
 0.470
gyrA
DNA gyrase subunit A.
  
  
 0.455
ligB
ATP-dependent DNA ligase; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.
   
 0.428
ntpK
A-type ATP synthase subunit K.
    
 0.428
ntpC
A-type ATP synthase subunit C.
    
 0.415
FAD_0843
Hypothetical protein.
  
 
 0.400
FAD_1051
Acylaminoacyl-peptidase.
  
 
 0.400
Your Current Organism:
Ferroplasma acidiphilum
NCBI taxonomy Id: 74969
Other names: DSM 12658, F. acidiphilum, Ferromonas metallovorans, Ferroplasma acidiphilum Golyshina et al. 2000, JCM 10970
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