virB protein (Ferroplasma acidiphilum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

virB

Type IV secretory pathway DNA translocase. (680 aa)

Predicted Functional Partners:

FAD_1266

0.834

FAD_1267

0.803

FAD_1566

0.781

FAD_1268

0.639

ftsY

0.621

FAD_0513

0.618

FAD_0980

0.618

FAD_1045

0.618

FAD_1246

0.618

arsR

0.618

Your Current Organism:

Ferroplasma acidiphilum

NCBI taxonomy Id: 74969
Other names: DSM 12658, F. acidiphilum, Ferromonas metallovorans, Ferroplasma acidiphilum Golyshina et al. 2000, JCM 10970

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FAD_0513	FAD_0980	FAD_0513	FAD_0980	acetyl-CoA acetyltransferase.	acetyl-CoA acetyltransferase.	0.907
FAD_0513	FAD_1045	FAD_0513	FAD_1045	acetyl-CoA acetyltransferase.	Ammonium transporter.	0.618
FAD_0513	FAD_1246	FAD_0513	FAD_1246	acetyl-CoA acetyltransferase.	Acetyl-CoA acetyltransferase; Frameshift and an internal stop codon in nucleotidyltransferase gene.	0.901
FAD_0513	virB	FAD_0513	FAD_1265	acetyl-CoA acetyltransferase.	Type IV secretory pathway DNA translocase.	0.618
FAD_0980	FAD_0513	FAD_0980	FAD_0513	acetyl-CoA acetyltransferase.	acetyl-CoA acetyltransferase.	0.907
FAD_0980	FAD_1045	FAD_0980	FAD_1045	acetyl-CoA acetyltransferase.	Ammonium transporter.	0.618
FAD_0980	FAD_1246	FAD_0980	FAD_1246	acetyl-CoA acetyltransferase.	Acetyl-CoA acetyltransferase; Frameshift and an internal stop codon in nucleotidyltransferase gene.	0.909
FAD_0980	virB	FAD_0980	FAD_1265	acetyl-CoA acetyltransferase.	Type IV secretory pathway DNA translocase.	0.618
FAD_1045	FAD_0513	FAD_1045	FAD_0513	Ammonium transporter.	acetyl-CoA acetyltransferase.	0.618
FAD_1045	FAD_0980	FAD_1045	FAD_0980	Ammonium transporter.	acetyl-CoA acetyltransferase.	0.618
FAD_1045	FAD_1246	FAD_1045	FAD_1246	Ammonium transporter.	Acetyl-CoA acetyltransferase; Frameshift and an internal stop codon in nucleotidyltransferase gene.	0.618
FAD_1045	arsR	FAD_1045	FAD_1795	Ammonium transporter.	Arsenite-dependent repressor.	0.618
FAD_1045	virB	FAD_1045	FAD_1265	Ammonium transporter.	Type IV secretory pathway DNA translocase.	0.618
FAD_1246	FAD_0513	FAD_1246	FAD_0513	Acetyl-CoA acetyltransferase; Frameshift and an internal stop codon in nucleotidyltransferase gene.	acetyl-CoA acetyltransferase.	0.901
FAD_1246	FAD_0980	FAD_1246	FAD_0980	Acetyl-CoA acetyltransferase; Frameshift and an internal stop codon in nucleotidyltransferase gene.	acetyl-CoA acetyltransferase.	0.909
FAD_1246	FAD_1045	FAD_1246	FAD_1045	Acetyl-CoA acetyltransferase; Frameshift and an internal stop codon in nucleotidyltransferase gene.	Ammonium transporter.	0.618
FAD_1246	virB	FAD_1246	FAD_1265	Acetyl-CoA acetyltransferase; Frameshift and an internal stop codon in nucleotidyltransferase gene.	Type IV secretory pathway DNA translocase.	0.618
FAD_1266	FAD_1267	FAD_1266	FAD_1267	Multipass membrane protein.	Multipass membrane protein.	0.830
FAD_1266	FAD_1268	FAD_1266	FAD_1268	Multipass membrane protein.	Hypothetical protein.	0.620
FAD_1266	virB	FAD_1266	FAD_1265	Multipass membrane protein.	Type IV secretory pathway DNA translocase.	0.834