Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| FAD_0005 | FAD_0158 | FAD_0005 | FAD_0158 | Peptidyl-prolyl cis-trans isomerase. | 50S ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.718 |
| FAD_0005 | FAD_0161 | FAD_0005 | FAD_0161 | Peptidyl-prolyl cis-trans isomerase. | 50S ribosomal protein L2P. | 0.649 |
| FAD_0005 | FAD_0175 | FAD_0005 | FAD_0175 | Peptidyl-prolyl cis-trans isomerase. | 50S ribosomal protein L6P. | 0.436 |
| FAD_0005 | FAD_1271 | FAD_0005 | FAD_1271 | Peptidyl-prolyl cis-trans isomerase. | medium-chain-fatty-acid-CoA ligase. | 0.549 |
| FAD_0005 | rpl14 | FAD_0005 | FAD_0169 | Peptidyl-prolyl cis-trans isomerase. | 50S ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.746 |
| FAD_0005 | sodA | FAD_0005 | FAD_1811 | Peptidyl-prolyl cis-trans isomerase. | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.823 |
| FAD_0158 | FAD_0005 | FAD_0158 | FAD_0005 | 50S ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Peptidyl-prolyl cis-trans isomerase. | 0.718 |
| FAD_0158 | FAD_0161 | FAD_0158 | FAD_0161 | 50S ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal protein L2P. | 0.999 |
| FAD_0158 | FAD_0175 | FAD_0158 | FAD_0175 | 50S ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal protein L6P. | 0.999 |
| FAD_0158 | FAD_0780 | FAD_0158 | FAD_0780 | 50S ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Cytochrome P450. | 0.491 |
| FAD_0158 | FAD_1271 | FAD_0158 | FAD_1271 | 50S ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | medium-chain-fatty-acid-CoA ligase. | 0.544 |
| FAD_0158 | FAD_1342 | FAD_0158 | FAD_1342 | 50S ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Cytochrome P450. | 0.491 |
| FAD_0158 | rpl14 | FAD_0158 | FAD_0169 | 50S ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.999 |
| FAD_0158 | sodA | FAD_0158 | FAD_1811 | 50S ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.942 |
| FAD_0161 | FAD_0005 | FAD_0161 | FAD_0005 | 50S ribosomal protein L2P. | Peptidyl-prolyl cis-trans isomerase. | 0.649 |
| FAD_0161 | FAD_0158 | FAD_0161 | FAD_0158 | 50S ribosomal protein L2P. | 50S ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.999 |
| FAD_0161 | FAD_0175 | FAD_0161 | FAD_0175 | 50S ribosomal protein L2P. | 50S ribosomal protein L6P. | 0.999 |
| FAD_0161 | FAD_0780 | FAD_0161 | FAD_0780 | 50S ribosomal protein L2P. | Cytochrome P450. | 0.505 |
| FAD_0161 | FAD_1271 | FAD_0161 | FAD_1271 | 50S ribosomal protein L2P. | medium-chain-fatty-acid-CoA ligase. | 0.548 |
| FAD_0161 | FAD_1342 | FAD_0161 | FAD_1342 | 50S ribosomal protein L2P. | Cytochrome P450. | 0.505 |
page 1 of 4