STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FAD_1719Hypothetical protein. (164 aa)    
Predicted Functional Partners:
FAD_0338
Precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit.
       0.710
eif6
Translation initiation factor IF-6; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex.
  
    0.679
FAD_0369
GTP-binding protein.
 
    0.601
FAD_0480
50S ribosomal protein L15e.
  
    0.594
rpl4
50S ribosomal protein L4P; Forms part of the polypeptide exit tunnel.
  
    0.571
nop5
Box C/D RNP protein Nop5.
  
    0.569
rpoD
DNA-directed RNA polymerase subunit D; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoD/eukaryotic RPB3 RNA polymerase subunit family.
  
    0.554
FAD_0331
50S ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.
 
    0.525
nob1
SSU rRNA endonuclease Nob1.
  
  
 0.518
FAD_0170
50S ribosomal protein L24P.
  
    0.495
Your Current Organism:
Ferroplasma acidiphilum
NCBI taxonomy Id: 74969
Other names: DSM 12658, F. acidiphilum, Ferromonas metallovorans, Ferroplasma acidiphilum Golyshina et al. 2000, JCM 10970
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.