STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP61350.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (733 aa)    
Predicted Functional Partners:
ALP61349.1
Labile enterotoxin output A; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.819
ALP61346.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 
 0.586
ALP61347.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.508
ALP61348.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.508
ALP61351.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.488
htpX
Protease HtpX; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M48B family.
     
 0.481
ALP62023.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.481
ALP63576.1
Peptidase M48; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.481
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
    
  0.448
ALP63398.1
benzoyl-CoA oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.448
Your Current Organism:
Paraburkholderia caribensis
NCBI taxonomy Id: 75105
Other names: Burkholderia caribensis, CCUG 42847, CIP 106784, DSM 13236, LMG 18531, LMG:18531, P. caribensis, strain MWAP64
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.