STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP64517.1Derived by automated computational analysis using gene prediction method: Protein Homology. (375 aa)    
Predicted Functional Partners:
ALP64516.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.944
ALP64518.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.930
ALP64519.1
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.896
ALP66449.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.694
ALP64288.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.554
ALP65707.1
Peptidase C39; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.550
ALP63436.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.549
ALP64239.1
Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.517
ALP66774.1
Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.513
ALP65115.1
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.507
Your Current Organism:
Paraburkholderia caribensis
NCBI taxonomy Id: 75105
Other names: Burkholderia caribensis, CCUG 42847, CIP 106784, DSM 13236, LMG 18531, LMG:18531, P. caribensis, strain MWAP64
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.