Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ALP65798.1Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (649 aa)    
Predicted Functional Partners:
ALP61163.1
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.806
ALP66320.1
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.806
ALP64491.1
Dihydroxyacetone kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.405
ALP64492.1
Dihydroxyacetone kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.405
ALP65752.1
With DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.405
ALP65753.1
Dak phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.405
Your Current Organism:
Paraburkholderia caribensis
NCBI taxonomy Id: 75105
Other names: Burkholderia caribensis, CCUG 42847, CIP 106784, DSM 13236, LMG 18531, LMG:18531, P. caribensis, strain MWAP64
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