Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AFV76119.1Mg-chelatase subunit ChlD; PFAM: von Willebrand factor type A domain. (307 aa)    
Predicted Functional Partners:
AFV76118.1
PFAM: Protein of unknown function DUF58.
 
    0.958
AFV76117.1
PFAM: ATPase family associated with various cellular activities (AAA).
 
  
 0.927
AFV76120.1
Mg-chelatase subunit ChlD; PFAM: von Willebrand factor type A domain.
 
    
0.864
AFV76156.1
Mg-chelatase subunit ChlI; PFAM: Sigma-54 interaction domain.
 
 
 0.848
AFV76116.1
Theronine dehydrogenase-like Zn-dependent dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase.
  
  
 0.608
AFV76115.1
Ribulose-5-phosphate 4-epimerase-like epimerase or aldolase; PFAM: Class II Aldolase and Adducin N-terminal domain.
       0.592
AFV76114.1
L-aminopeptidase/D-esterase; PFAM: Peptidase family S58.
  
    0.455
AFV76206.1
PFAM: von Willebrand factor type A domain.
 
     0.452
AFV75445.1
PFAM: ATPase family associated with various cellular activities (AAA).
 
  
 0.402
Your Current Organism:
Thermus oshimai
NCBI taxonomy Id: 751945
Other names: T. oshimai JL-2, Thermus oshimai JL-2, Thermus oshimai str. JL-2, Thermus oshimai strain JL-2
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