STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFV76998.1Zn-dependent hydrolase, glyoxylase; PFAM: Metallo-beta-lactamase superfamily. (204 aa)    
Predicted Functional Partners:
dxs
1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
       0.785
AFV77000.1
Hypothetical protein.
       0.784
AFV76997.1
Hypothetical protein.
       0.783
thrS
threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).
  
    0.623
AFV76996.1
PFAM: Radical SAM superfamily; TIGRFAM: radical SAM protein, BA_1875 family; radical SAM additional 4Fe4S-binding domain.
  
    0.619
AFV76995.1
Cytochrome c, mono- and diheme variants family; PFAM: Cytochrome c.
       0.612
AFV77001.1
ABC-type sugar transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein.
  
    0.602
AFV77002.1
Phenylacetic acid-responsive transcriptional repressor; PFAM: PaaX-like protein; PaaX-like protein C-terminal domain.
  
    0.602
AFV75321.1
PFAM: Manganese containing catalase.
  
     0.443
AFV77004.1
Antitoxin of toxin-antitoxin stability system; PFAM: Phd_YefM.
       0.437
Your Current Organism:
Thermus oshimai
NCBI taxonomy Id: 751945
Other names: T. oshimai JL-2, Thermus oshimai JL-2, Thermus oshimai str. JL-2, Thermus oshimai strain JL-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.