AQA09450.1 protein (Streptomyces autolyticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AQA09450.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)

Predicted Functional Partners:

glmM

0.954

pgi

0.945

glmS

0.928

glmS-2

0.928

AQA13983.1

0.928

AQA11252.1

0.917

AQA12252.1

0.913

AQA09452.1

0.752

zwf

0.752

zwf-2

0.752

Your Current Organism:

Streptomyces autolyticus

NCBI taxonomy Id: 75293
Other names: S. autolyticus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQA09450.1	AQA09452.1	BV401_02065	BV401_02075	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.752
AQA09450.1	AQA11252.1	BV401_02065	BV401_12960	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
AQA09450.1	AQA12252.1	BV401_02065	BV401_19140	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mannose-6-phosphate isomerase, class I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.913
AQA09450.1	AQA13983.1	BV401_02065	BV401_29820	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glucosamine-6-phosphate deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.928
AQA09450.1	glmM	BV401_02065	BV401_26290	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.	0.954
AQA09450.1	glmS	BV401_02065	BV401_17720	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamine--fructose-6-phosphate transaminase (isomerizing); Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.	0.928
AQA09450.1	glmS-2	BV401_02065	BV401_26305	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamine--fructose-6-phosphate transaminase (isomerizing); Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.	0.928
AQA09450.1	pgi	BV401_02065	BV401_12890	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glucose-6-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GPI family.	0.945
AQA09450.1	zwf	BV401_02065	BV401_12875	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glucose-6-phosphate dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.	0.752
AQA09450.1	zwf-2	BV401_02065	BV401_35265	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glucose-6-phosphate dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.	0.752
AQA09452.1	AQA09450.1	BV401_02075	BV401_02065	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.752
AQA11252.1	AQA09450.1	BV401_12960	BV401_02065	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
AQA11252.1	AQA12252.1	BV401_12960	BV401_19140	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mannose-6-phosphate isomerase, class I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
AQA11252.1	AQA13983.1	BV401_12960	BV401_29820	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glucosamine-6-phosphate deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.907
AQA11252.1	glmS	BV401_12960	BV401_17720	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamine--fructose-6-phosphate transaminase (isomerizing); Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.	0.907
AQA11252.1	glmS-2	BV401_12960	BV401_26305	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamine--fructose-6-phosphate transaminase (isomerizing); Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.	0.907
AQA11252.1	pgi	BV401_12960	BV401_12890	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glucose-6-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GPI family.	0.923
AQA12252.1	AQA09450.1	BV401_19140	BV401_02065	Mannose-6-phosphate isomerase, class I; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.913
AQA12252.1	AQA11252.1	BV401_19140	BV401_12960	Mannose-6-phosphate isomerase, class I; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
AQA12252.1	AQA13983.1	BV401_19140	BV401_29820	Mannose-6-phosphate isomerase, class I; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glucosamine-6-phosphate deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.910