STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQA15187.1Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (679 aa)    
Predicted Functional Partners:
AQA16741.1
Rhamnulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.965
AQA15188.1
L-rhamnose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.937
AQA15192.1
L-rhamnose mutarotase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.916
AQA15189.1
Rhamnosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.844
AQA16743.1
Rhamnose ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.795
AQA16742.1
(4Fe-4S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.726
AQA15186.1
Fe-S oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.723
AQA16740.1
Lactate utilization protein C; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.654
AQA15191.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.
 
    0.624
BV401_37065
D-xylose ABC transporter ATP-binding protein; With RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.
 
    0.622
Your Current Organism:
Streptomyces autolyticus
NCBI taxonomy Id: 75293
Other names: S. autolyticus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.