Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC107593980Tetraspanin-11-like. (260 aa)    
Predicted Functional Partners:
ENSSGRP00000049999
Integrin beta-4-like.
   
 0.905
ENSSGRP00000057916
Integrin beta-4-like.
   
 0.905
LOC107601250
Integrin alpha-3-like isoform X1.
    
 0.842
itga3
Integrin alpha 3.
    
 0.842
LOC107557321
Integrin alpha-3-like.
    
 0.842
ENSSGRP00000108829
Integrin, alpha 3a.
    
 0.842
LOC107559685
CD9 antigen-like.
    
 0.738
LOC107579798
CD9 antigen-like isoform X1.
    
 0.738
LOC107583958
CD9 antigen-like isoform X1.
    
 0.738
gramd1c
GRAM domain-containing protein 1C.
    
   0.725
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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