Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSGRP00000001006DNA-directed RNA polymerase I subunit RPA1-like. (1233 aa)    
Predicted Functional Partners:
polr1e
DNA-directed RNA polymerase I subunit RPA49.
   
 0.998
LOC107595594
DNA-directed RNA polymerase I subunit RPA12-like.
   
 0.997
POLR2F
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
  
 0.997
ENSSGRP00000051632
DNA-directed RNA polymerases I and III subunit RPAC1-like.
  
 0.996
polr1c
DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1.
  
 0.996
LOC107571144
DNA-directed RNA polymerase I subunit RPA43-like.
   
 0.995
ENSSGRP00000017087
RNA polymerase I and III subunit D.
  
 0.995
TWISTNB
DNA-directed RNA polymerase I subunit RPA43.
   
 0.995
ENSSGRP00000075053
CD3e molecule, epsilon associated protein.
   
 0.991
polr1b
DNA-directed RNA polymerase I subunit RPA2.
  
 0.990
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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