STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tyw5TRNA wybutosine-synthesizing protein 5 isoform X1. (319 aa)    
Predicted Functional Partners:
tyw3
TRNA wybutosine-synthesizing protein 3 homolog.
      
 0.652
Mina
Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA.
      
 0.647
JMJD8
JmjC domain-containing protein 8.
      
 0.643
ENSSGRP00000025885
S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase.
      
 0.628
ENSSGRP00000092941
S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase-like.
      
 0.628
LOC107588721
TRNA (guanine(37)-N1)-methyltransferase-like isoform X1.
   
  
 0.530
ENSSGRP00000088089
tRNA methyltransferase 5.
   
  
 0.530
LOC107583683
Alkylated DNA repair protein alkB homolog 1.
      
 0.518
LOC107588279
DNA oxidative demethylase ALKBH1-like isoform X1.
      
 0.518
ENSSGRP00000003225
Endothelial PAS domain-containing protein 1-like.
    
 0.517
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.