Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSGRP00000001048Uncharacterized protein LOC107571719. (580 aa)    
Predicted Functional Partners:
LOC107572061
Ubiquitin-conjugating enzyme E2 variant 1.
   
 0.943
Trip12
E3 ubiquitin-protein ligase TRIP12.
   
 0.920
ENSSGRP00000084766
E3 ubiquitin-protein ligase TRIP12-like.
   
 0.920
ENSSGRP00000032432
annotation not available
    
 0.832
Fancm
Fanconi anemia group M protein.
    
 0.832
ENSSGRP00000034836
RING finger protein 223-like.
    
 0.794
ENSSGRP00000000760
Baculoviral IAP repeat-containing protein 6 (apollon).
   
 0.767
LOC107583536
Baculoviral IAP repeat-containing protein 6-like isoform X1.
   
 0.767
pex10
Peroxisome biogenesis factor 10.
    
 0.742
skp1
S-phase kinase-associated protein 1 isoform X1.
   
 0.725
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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